FastQCFastQC Report
Mon 17 Nov 2025
052950-3_R1.clean.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename052950-3_R1.clean.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7688105
Sequences flagged as poor quality0
Sequence length40-150
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTATAA22700.07.0583534140-144
GTCGTAT20800.06.892253140-144
ACGGTCG22700.06.7565556135-139
TCGTATA22850.06.3969293140-144
CTCGTAT12502.3683242E-75.39704140-144
CGGTCGT26650.05.169849135-139
GGTCGTA28000.05.0195684140-144
Produced by FastQC (version 0.11.3)