FastQCFastQC Report
Wed 3 Dec 2025
38392-8_R1.clean.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename38392-8_R1.clean.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences36536
Sequences flagged as poor quality0
Sequence length40-150
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
AACCGTT150.009700388130.29518140-144
ATACTTC207.038754E-493.352823
TGTCGGC207.038754E-493.352823
TAGCAAG207.116188E-493.096715
GAACCAT207.155143E-492.969187
TTGTATC250.001707509674.682252
TATACTT250.001707509674.682252
GATGTCG300.003518164662.2352141
GGCAACC300.003518164662.2352142
ATGTCGG300.003518164662.2352142
TCGGCCT300.00355674362.0644725
AAGGAAC300.00355674362.0644724
GTCGGCC300.00355674362.0644724
ATACTGA300.003576150261.979456
GCAAGTG452.558739E-455.0928467
AGGACTT350.00647637553.344471
TACTTCA350.00654727653.198124
AGGAACC350.00654727653.198125
ACCATGT350.00658294353.1252449
GATCCAT250.00675275752.815178115-119
Produced by FastQC (version 0.11.3)